If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ), 'gf_id' => 'HOM05D000583', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000583' ), 'data_identifier' => 'HOM05D000583', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000583', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '954', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01060' => 'bna', 'A01p15800' => 'bna', 'A06p06590' => 'bna', 'A06p06600' => 'bna', 'A06p06620' => 'bna', 'A07p24500' => 'bna', 'A08p22980' => 'bna', 'A08p23020' => 'bna', 'A08p23030' => 'bna', 'A08p23040' => 'bna', 'A08p34300' => 'bna', 'A09p57380' => 'bna', 'Aa31LG1G4980' => 'aar', 'Aa31LG1G5000' => 'aar', 'Aa31LG1G5010' => 'aar', 'Aa31LG2G10860' => 'aar', 'Aa31LG4G9530' => 'aar', 'Aa31LG6G14890' => 'aar', 'Aa31LG6G14900' => 'aar', 'Aa31LG6G14910' => 'aar', 'Aa31LG6G14970' => 'aar', 'Aa31LG7G14180' => 'aar', 'Aa31LG7G14200' => 'aar', 'Actinidia02212' => 'ach', 'Actinidia02223' => 'ach', 'Actinidia06502' => 'ach', 'Actinidia19255' => 'ach', 'Actinidia19614' => 'ach', 'Actinidia25292' => 'ach', 'Actinidia25294' => 'ach', 'Ah.05g171540' => 'amhyb', 'Ah.05g171600' => 'amhyb', 'Ah.05g171620' => 'amhyb', 'Ah.05g171630' => 'amhyb', 'AL1G20480' => 'aly', 'AL1G20490' => 'aly', 'AL1G20510' => 'aly', 'AL4G12160' => 'aly', 'AL7G12610' => 'aly', 'AL7G12690' => 'aly', 'AL7G28790' => 'aly', 'Aqoxy1G02085' => 'aox', 'Aqoxy1G02503' => 'aox', 'Aqoxy3G01303' => 'aox', 'Aqoxy5G01867_Aqoxy5G01868' => 'aox', 'Aqoxy6G00661' => 'aox', 'Aqoxy6G00662_Aqoxy6G00663' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0C334A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.33N7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4A1W4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B7F2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IG7E5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8CY5CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCG363' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX15YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBQ046' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8J8JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9L63V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWQ05L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX92E1' => 'arhy', 'AT1G09880' => 'ath', 'AT1G09890' => 'ath', 'AT1G09910' => 'ath', 'AT1G65210' => 'ath', 'AT2G22620' => 'ath', 'AT4G24430' => 'ath', 'AT4G37950' => 'ath', 'AT4G38030' => 'ath', 'ATR0794G068' => 'atr', 'ATR0794G070' => 'atr', 'ATR0794G091' => 'atr', 'ATR0800G106' => 'atr', 'ATR0800G122' => 'atr', 'ATR0800G128' => 'atr', 'ATR0800G168' => 'atr', 'Atru.chr1.98' => 'acertr', 'Atru.chr1.99' => 'acertr', 'Atru.chr10.2246' => 'acertr', 'Atru.chr13.956' => 'acertr', 'Atru.chr13.959' => 'acertr', 'Atru.chr13.960' => 'acertr', 'Atru.chr13.961' => 'acertr', 'Atru.chr13.962' => 'acertr', 'Atru.chr13.963' => 'acertr', 'Atru.chr13.968' => 'acertr', 'Atru.chr13.970' => 'acertr', 'Atru.chr13.971' => 'acertr', 'Atru.chr3.1201' => 'acertr', 'AUR62014371' => 'cqu', 'AUR62014372' => 'cqu', 'AUR62014376' => 'cqu', 'AUR62014377' => 'cqu', 'AUR62014378' => 'cqu', 'AUR62019114' => 'cqu', 'AUR62019118' => 'cqu', 'AUR62019120' => 'cqu', 'AUR62026233' => 'cqu', 'AUR62026234' => 'cqu', 'AUR62026236' => 'cqu', 'AUR62026419' => 'cqu', 'AUR62026420' => 'cqu', 'AUR62026422' => 'cqu', 'BcaB02g07482' => 'bca', 'BcaB03g12317' => 'bca', 'BcaB03g12321' => 'bca', 'BcaB03g13544' => 'bca', 'BcaC01g00354' => 'bca', 'BcaC01g00363' => 'bca', 'BcaC02g08636' => 'bca', 'BcaC05g24833' => 'bca', 'BcaC05g24835' => 'bca', 'BcaC05g24836' => 'bca', 'BcaC07g38532' => 'bca', 'BcaC07g41045' => 'bca', 'BcaC08g44960' => 'bca', 'BcaC09g50869' => 'bca', 'BcaNung00952' => 'bca', 'BcaNung05372' => 'bca', 'BcaNung06653' => 'bca', 'BolC1t00116H' => 'bol', 'BolC1t01903H' => 'bol', 'BolC3t20126H' => 'bol', 'BolC3t20132H' => 'bol', 'BolC4t26759H' => 'bol', 'BolC5t29552H' => 'bol', 'BolC5t29553H' => 'bol', 'BolC5t29555H' => 'bol', 'BolC6t37752H' => 'bol', 'BolC8t48955H' => 'bol', 'BolC8t48956H' => 'bol', 'BolC8t51617H' => 'bol', 'BraA01t00104Z' => 'bra', 'BraA01t01515Z' => 'bra', 'BraA06t23873Z' => 'bra', 'BraA06t23874Z' => 'bra', 'BraA06t23876Z' => 'bra', 'BraA07t30094Z' => 'bra', 'BraA08t34259Z' => 'bra', 'BraA08t34262Z' => 'bra', 'BraA08t35341Z' => 'bra', 'BraA09t41130Z' => 'bra', 'C01p01180' => 'bna', 'C01p19740' => 'bna', 'C01p19750' => 'bna', 'C03p78790' => 'bna', 'C03p78830' => 'bna', 'C03p78880' => 'bna', 'C04p51850' => 'bna', 'C05p08000' => 'bna', 'C05p08010' => 'bna', 'C05p08030' => 'bna', 'C06p25900' => 'bna', 'C08p13240' => 'bna', 'C08p40460' => 'bna', 'CAN.G10387.1' => 'can', 'CAN.G1104.10' => 'can', 'CAN.G1263.8' => 'can', 'CAN.G1263.9' => 'can', 'CAN.G1829.1' => 'can', 'CAN.G222.1' => 'can', 'CAN.G222.2' => 'can', 'CAN.G222.3' => 'can', 'CAN.G456.3' => 'can', 'CAN.G525.13' => 'can', 'CAN.G525.17' => 'can', 'CAN.G581.8' => 'can', 'CAN.G676.38' => 'can', 'CAN.G676.39' => 'can', 'CAN.G723.1' => 'can', 'CAN.G723.2' => 'can', 'CAN.G723.3' => 'can', 'CAN.G723.4' => 'can', 'CAN.G723.5' => 'can', 'CAN.G723.6' => 'can', 'CANSAT01G2345' => 'cansat', 'CANSAT25G0466' => 'cansat', 'CANSAT25G3363' => 'cansat', 'CANSAT56G1651' => 'cansat', 'CANSAT64G1250' => 'cansat', 'CANSAT80G0593' => 'cansat', 'CANSAT80G0765' => 'cansat', 'CANSAT80G2106' => 'cansat', 'CARHR009910' => 'chi', 'CARHR009920' => 'chi', 'CARHR009930' => 'chi', 'CARHR009950' => 'chi', 'CARHR056820' => 'chi', 'CARHR113840' => 'chi', 'CARHR231820' => 'chi', 'CARHR246370' => 'chi', 'CARHR246440' => 'chi', 'Carub.0001s0926' => 'cru', 'Carub.0001s0927' => 'cru', 'Carub.0001s0929' => 'cru', 'Carub.0002s1074' => 'cru', 'Carub.0004s0178' => 'cru', 'Carub.0007s0219' => 'cru', 'Carub.0007s0226' => 'cru', 'Carub.0007s1664' => 'cru', 'Ca_05475_v3' => 'car', 'Ca_15537_v3' => 'car', 'Ca_15538_v3' => 'car', 'Ca_25213_v3' => 'car', 'Ca_27425_v3' => 'car', 'Ca_30557_v3' => 'car', 'CBR_g27981' => 'cbr', 'CBR_g4769' => 'cbr', 'CBR_g50015' => 'cbr', 'CBR_g50020' => 'cbr', 'CBR_g89002' => 'cbr', 'Cc03_g14960' => 'ccan', 'Cc07_g13600' => 'ccan', 'Cc07_g13610' => 'ccan', 'Cc07_g13620' => 'ccan', 'Cc07_g13630' => 'ccan', 'Cc07_g13640' => 'ccan', 'Cc07_g13650' => 'ccan', 'Cc07_g13680' => 'ccan', 'Cc07_g13690' => 'ccan', 'Cc10_g08320' => 'ccan', 'Cc10_g08330' => 'ccan', 'Cc10_g08340' => 'ccan', 'Cc10_g08350' => 'ccan', 'CDE02G2264' => 'cde', 'CDE02G4000' => 'cde', 'CDE04G0296' => 'cde', 'CDE04G2306' => 'cde', 'CDE05G2648' => 'cde', 'Cfa000208' => 'cfa', 'Cfa000598' => 'cfa', 'Cfa006845' => 'cfa', 'Cfa006846' => 'cfa', 'Cfa013818' => 'cfa', 'Cfa013819' => 'cfa', 'Cfa013820' => 'cfa', 'Ciclev10000542m.g' => 'ccl', 'Ciclev10000543m.g' => 'ccl', 'Ciclev10003131m.g' => 'ccl', 'Ciclev10003466m.g' => 'ccl', 'Ciclev10003567m.g' => 'ccl', 'Ciclev10003807m.g' => 'ccl', 'Ciclev10006424m.g' => 'ccl', 'Ciclev10006636m.g' => 'ccl', 'Ciclev10017592m.g' => 'ccl', 'Ciclev10025074m.g' => 'ccl', 'Ciclev10027111m.g' => 'ccl', 'Ciclev10027332m.g' => 'ccl', 'CiPaw.07G043700' => 'cil', 'CiPaw.07G043800' => 'cil', 'CiPaw.07G162500' => 'cil', 'CiPaw.07G162600' => 'cil', 'CiPaw.07G162700' => 'cil', 'CiPaw.08G057400' => 'cil', 'CiPaw.08G057500' => 'cil', 'CiPaw.08G143900' => 'cil', 'CiPaw.09G093300' => 'cil', 'ClCG01G018240' => 'cla', 'ClCG01G021880' => 'cla', 'ClCG01G021890' => 'cla', 'ClCG08G011530' => 'cla', 'ClCG10G008270' => 'cla', 'ClCG11G014710' => 'cla', 'COL.COLO4_11702' => 'col', 'COL.COLO4_11703' => 'col', 'COL.COLO4_11704' => 'col', 'COL.COLO4_11705' => 'col', 'COL.COLO4_11706' => 'col', 'COL.COLO4_20518' => 'col', 'COL.COLO4_35288' => 'col', 'COL.COLO4_35289' => 'col', 'COL.COLO4_35291' => 'col', 'COL.COLO4_35292' => 'col', 'COL.COLO4_35293' => 'col', 'COL.COLO4_35294' => 'col', 'COL.COLO4_35295' => 'col', 'COL.COLO4_38137' => 'col', 'Cpa.g.c29377' => 'cpa', 'Cpa.g.sc129.7' => 'cpa', 'Cpa.g.sc152.24' => 'cpa', 'Cpa.g.sc177.18' => 'cpa', 'Cpa.g.sc177.19' => 'cpa', 'Cpa.g.sc21.45' => 'cpa', 'CsaV3_2G030120' => 'csa', 'CsaV3_3G006970' => 'csa', 'CsaV3_3G048100' => 'csa', 'CsaV3_3G048110' => 'csa', 'CsaV3_3G048120' => 'csa', 'CsaV3_6G044820' => 'csa', 'CsaV3_6G048940' => 'csa', 'CsaV3_6G048950' => 'csa', 'CSS0005339' => 'camsi', 'CSS0007518' => 'camsi', 'CSS0010579' => 'camsi', 'CSS0019015' => 'camsi', 'CSS0022989' => 'camsi', 'CSS0023222' => 'camsi', 'CSS0024720' => 'camsi', 'CSS0029234' => 'camsi', 'CSS0030352' => 'camsi', 'CSS0033395' => 'camsi', 'CSS0035425' => 'camsi', 'CSS0041620' => 'camsi', 'CSS0046620' => 'camsi', 'CSS0047971' => 'camsi', 'CSS0049227' => 'camsi', 'DCAR_003066' => 'dca', 'DCAR_003436' => 'dca', 'DCAR_008163' => 'dca', 'DCAR_012142' => 'dca', 'DCAR_012850' => 'dca', 'DCAR_019325' => 'dca', 'DCAR_020030' => 'dca', 'Dinv27011' => 'din', 'Dinv36964' => 'din', 'Dinv36965' => 'din', 'Dinv36966' => 'din', 'Dinv36967' => 'din', 'Dinv36968' => 'din', 'Dinv42588' => 'din', 'Dinv44879' => 'din', 'Duzib041G0503' => 'dzi', 'Duzib093G0166' => 'dzi', 'Duzib093G0253' => 'dzi', 'Duzib093G0640' => 'dzi', 'Duzib093G0868' => 'dzi', 'Duzib116G0894' => 'dzi', 'Duzib147G0308' => 'dzi', 'Duzib187G1173' => 'dzi', 'Duzib264G0400' => 'dzi', 'ECA232G2370' => 'eca', 'ECA232G2660' => 'eca', 'ECA247G0577' => 'eca', 'ECA247G1373' => 'eca', 'ECA247G1397' => 'eca', 'ECA247G2124' => 'eca', 'ECA247G2382' => 'eca', 'EL10Ac1g00476' => 'bvu', 'EL10Ac1g00478' => 'bvu', 'EL10Ac1g00479' => 'bvu', 'EL10Ac1g00480' => 'bvu', 'EL10Ac1g00481' => 'bvu', 'EL10Ac1g00485' => 'bvu', 'EL10Ac6g13316' => 'bvu', 'EL10Ac6g13317' => 'bvu', 'EL10Ac6g13319' => 'bvu', 'EL10Ac6g13321' => 'bvu', 'EL10Ac6g13322' => 'bvu', 'EL10Ac6g13323' => 'bvu', 'Eucgr.D01343' => 'egr', 'Eucgr.F00438' => 'egr', 'Eucgr.F00439' => 'egr', 'Eucgr.F00441' => 'egr', 'Eucgr.F00442' => 'egr', 'Eucgr.H02416' => 'egr', 'Eucgr.I00574' => 'egr', 'FAN02G1633' => 'fan', 'FAN04G1774' => 'fan', 'FAN05G1649' => 'fan', 'FAN05G2479' => 'fan', 'FAN08G0535' => 'fan', 'FAN08G0855' => 'fan', 'FAN08G1389' => 'fan', 'FAN08G2532' => 'fan', 'FAN08G2845' => 'fan', 'FAN09G3799' => 'fan', 'FAN13G0798' => 'fan', 'FAN14G4912' => 'fan', 'FAN18G1709' => 'fan', 'FAN18G3720' => 'fan', 'FAN19G0221' => 'fan', 'FAN19G2159' => 'fan', 'FAN19G2835' => 'fan', 'FAN21G2688' => 'fan', 'FAN23G1217' => 'fan', 'FAN23G2422' => 'fan', 'FAN25G2898' => 'fan', 'FAN26G1102' => 'fan', 'FAN26G2220' => 'fan', 'FAN28G0727' => 'fan', 'FAN28G0941' => 'fan', 'FAN28G1492' => 'fan', 'FAN28G1677' => 'fan', 'FAN28G2788' => 'fan', 'FvH4_1g03290' => 'fve', 'FvH4_1g03300' => 'fve', 'FvH4_1g19194' => 'fve', 'FvH4_1g19200' => 'fve', 'FvH4_3g01850' => 'fve', 'FvH4_5g14300' => 'fve', 'FvH4_5g34110' => 'fve', 'FvH4_5g34111' => 'fve', 'FvH4_5g34130' => 'fve', 'FvH4_5g34131' => 'fve', 'FvH4_5g34150' => 'fve', 'FvH4_6g37410' => 'fve', 'Glyma.01G020800' => 'gma', 'Glyma.02G216275' => 'gma', 'Glyma.02G216300' => 'gma', 'Glyma.03G088200' => 'gma', 'Glyma.04G091066' => 'gma', 'Glyma.04G091132' => 'gma', 'Glyma.04G091200' => 'gma', 'Glyma.04G091300' => 'gma', 'Glyma.06G092800' => 'gma', 'Glyma.06G092900' => 'gma', 'Glyma.08G275500' => 'gma', 'Glyma.08G275600' => 'gma', 'Glyma.09G201300' => 'gma', 'Glyma.14G183400' => 'gma', 'Glyma.18G150600' => 'gma', 'Gohir.A01G125900' => 'ghi', 'Gohir.A01G125950' => 'ghi', 'Gohir.A02G145700' => 'ghi', 'Gohir.A02G145800' => 'ghi', 'Gohir.A05G216700' => 'ghi', 'Gohir.A05G216800' => 'ghi', 'Gohir.A06G030600' => 'ghi', 'Gohir.A06G030700' => 'ghi', 'Gohir.A11G207980' => 'ghi', 'Gohir.A12G081265' => 'ghi', 'Gohir.A12G083000' => 'ghi', 'Gohir.D01G113600' => 'ghi', 'Gohir.D03G034800' => 'ghi', 'Gohir.D03G035000' => 'ghi', 'Gohir.D05G220666' => 'ghi', 'Gohir.D05G220732' => 'ghi', 'Gohir.D06G029900' => 'ghi', 'Gohir.D06G029950' => 'ghi', 'Gohir.D06G030000' => 'ghi', 'Gohir.D11G215400' => 'ghi', 'Gohir.D12G080800' => 'ghi', 'Gohir.D12G081000' => 'ghi', 'Gorai.002G138200' => 'gra', 'Gorai.003G036400' => 'gra', 'Gorai.003G036600' => 'gra', 'Gorai.007G231600' => 'gra', 'Gorai.008G089100' => 'gra', 'Gorai.008G089300' => 'gra', 'Gorai.009G227700' => 'gra', 'Gorai.009G227800' => 'gra', 'Gorai.010G032900' => 'gra', 'Gorai.010G033000' => 'gra', 'GSVIVG01006298001' => 'vvi', 'GSVIVG01006302001' => 'vvi', 'GSVIVG01006463001' => 'vvi', 'GSVIVG01009215001' => 'vvi', 'GSVIVG01012710001' => 'vvi', 'HanXRQChr02g0045921' => 'han', 'HanXRQChr02g0045931' => 'han', 'HanXRQChr02g0045941' => 'han', 'HanXRQChr02g0046011' => 'han', 'HanXRQChr02g0046021' => 'han', 'HanXRQChr07g0187771' => 'han', 'HanXRQChr09g0246361' => 'han', 'HanXRQChr09g0259491' => 'han', 'HanXRQChr09g0259511' => 'han', 'HanXRQChr14g0452181' => 'han', 'Haze_03913' => 'cav', 'Haze_06042' => 'cav', 'Haze_06054' => 'cav', 'Haze_06055' => 'cav', 'Haze_06247' => 'cav', 'Haze_06248' => 'cav', 'Haze_06814' => 'cav', 'Haze_22492' => 'cav', 'Hma1.2p1_0010F.1_g006450' => 'hma', 'Hma1.2p1_0010F.1_g006460' => 'hma', 'Hma1.2p1_0010F.1_g006470' => 'hma', 'Hma1.2p1_0010F.1_g006480' => 'hma', 'Hma1.2p1_0080F.1_g042030' => 'hma', 'Hma1.2p1_0675F.1_g201750' => 'hma', 'Hma1.2p1_0675F.1_g201760' => 'hma', 'Hma1.2p1_0675F.1_g201790' => 'hma', 'Hma1.2p1_2048F.1_g312440' => 'hma', 'Hma1.2p1_2048F.1_g312450' => 'hma', 'Hma1.2p1_2583F.1_g324820' => 'hma', 'Hma1.2p1_3370F.1_g335640' => 'hma', 'HPP92_025945' => 'vpl', 'Hund12833' => 'sun', 'Hund16617' => 'sun', 'Hund17254' => 'sun', 'Hund17255' => 'sun', 'Hund17256' => 'sun', 'Hund17257' => 'sun', 'Hund17258' => 'sun', 'Hund17259' => 'sun', 'Hund17261' => 'sun', 'Hund26829' => 'sun', 'Hund26830' => 'sun', 'Hund26831' => 'sun', 'Lalb_Chr05g0216221' => 'lal', 'Lalb_Chr05g0228581' => 'lal', 'Lalb_Chr05g0228591' => 'lal', 'Lalb_Chr05g0228621' => 'lal', 'Lalb_Chr05g0228631' => 'lal', 'Lalb_Chr05g0228641' => 'lal', 'Lalb_Chr08g0242621' => 'lal', 'Lalb_Chr09g0325841' => 'lal', 'Lalb_Chr09g0325851' => 'lal', 'Lalb_Chr09g0325861' => 'lal', 'Lalb_Chr09g0325871' => 'lal', 'Lalb_Chr16g0392091' => 'lal', 'Lalb_Chr16g0392101' => 'lal', 'Lalb_Chr17g0344641' => 'lal', 'Lalb_Chr23g0269911' => 'lal', 'Lalb_Chr23g0269921' => 'lal', 'Lj1A1232T98' => 'lonja', 'Lj1A1232T99' => 'lonja', 'Lj1g0013261' => 'lja', 'Lj1g0021799' => 'lja', 'Lj2g0016894' => 'lja', 'Lj2g0021024' => 'lja', 'Lj3A931T44' => 'lonja', 'Lj4A265T85' => 'lonja', 'Lj4A741G81' => 'lonja', 'Lj4A741T90' => 'lonja', 'Lj4C265G5' => 'lonja', 'Lj4C265G6' => 'lonja', 'Lj4C741G4' => 'lonja', 'Lj4C85G7' => 'lonja', 'Lj4g0012182' => 'lja', 'Lj4g0020190' => 'lja', 'Lj4g0020625' => 'lja', 'Lj6A380T30' => 'lonja', 'LjContig00408g0010326' => 'lja', 'Lju188C12G5' => 'lonja', 'Lju912A2G55' => 'lonja', 'Lsat_1_v5_gn_1_1000' => 'lsa', 'Lsat_1_v5_gn_1_2021' => 'lsa', 'Lsat_1_v5_gn_1_860' => 'lsa', 'Lsat_1_v5_gn_1_920' => 'lsa', 'Lsat_1_v5_gn_4_142700' => 'lsa', 'Lsat_1_v5_gn_4_76140' => 'lsa', 'Manes.03G065712' => 'mes', 'Manes.03G065728' => 'mes', 'Manes.03G066581' => 'mes', 'Manes.03G066597' => 'mes', 'Manes.03G066613' => 'mes', 'Manes.03G066629' => 'mes', 'Manes.03G066645' => 'mes', 'Manes.03G066662' => 'mes', 'Manes.03G066678' => 'mes', 'Manes.03G066694' => 'mes', 'Manes.03G080262' => 'mes', 'Manes.03G081224' => 'mes', 'Manes.03G084900' => 'mes', 'Manes.03G098832' => 'mes', 'Manes.05G188300' => 'mes', 'Manes.05G188700' => 'mes', 'Manes.12G122300' => 'mes', 'Manes.12G122700' => 'mes', 'Manes.13G102600' => 'mes', 'Manes.13G102800' => 'mes', 'Manes.16G005700' => 'mes', 'Manes.18G057200' => 'mes', 'Manes.18G057400' => 'mes', 'Mapoly0001s0414' => 'mpo', 'Mapoly0003s0127' => 'mpo', 'Mapoly0003s0188' => 'mpo', 'Mapoly0010s0120' => 'mpo', 'Mapoly0010s0121' => 'mpo', 'Mapoly0026s0012' => 'mpo', 'Mapoly0026s0013' => 'mpo', 'Mapoly0026s0014' => 'mpo', 'Mapoly0074s0083' => 'mpo', 'Mapoly0190s0018' => 'mpo', 'Mapoly0212s0010' => 'mpo', 'Mapoly0218s0013' => 'mpo', 'Mapoly0504s0001' => 'mpo', 'Mapoly1996s0001' => 'mpo', 'MBI16_g12304_MAGBIO' => 'mbi', 'MBI16_g12305_MAGBIO' => 'mbi', 'MBI18_g23125_MAGBIO' => 'mbi', 'MBI18_g23128_MAGBIO' => 'mbi', 'MBI18_g23130_MAGBIO' => 'mbi', 'MD01G1043200' => 'mdo', 'MD01G1043300' => 'mdo', 'MD02G1298500' => 'mdo', 'MD02G1298700' => 'mdo', 'MD02G1298900' => 'mdo', 'MD04G1240500' => 'mdo', 'MD08G1204400' => 'mdo', 'MD08G1205000' => 'mdo', 'MD08G1205800' => 'mdo', 'MD08G1205900' => 'mdo', 'MD10G1323400' => 'mdo', 'MD12G1256900' => 'mdo', 'MD12G1257400' => 'mdo', 'MD12G1257500' => 'mdo', 'MD15G1308100' => 'mdo', 'MD15G1308200' => 'mdo', 'MD15G1389100' => 'mdo', 'MD15G1389300' => 'mdo', 'MD15G1389400' => 'mdo', 'Medtr3g111380' => 'mtr', 'Medtr3g111410' => 'mtr', 'Medtr3g111420' => 'mtr', 'Medtr5g031170' => 'mtr', 'Medtr5g066770' => 'mtr', 'Medtr5g066820' => 'mtr', 'Medtr8g068110' => 'mtr', 'Medtr8g068120' => 'mtr', 'Medtr8g068160' => 'mtr', 'MELO3C003505.2' => 'cme', 'MELO3C003506.2' => 'cme', 'MELO3C003507.2' => 'cme', 'MELO3C007399.2' => 'cme', 'MELO3C007701.2' => 'cme', 'MELO3C011070.2' => 'cme', 'MELO3C014957.2' => 'cme', 'MELO3C027188.2' => 'cme', 'Migut.C00073' => 'egut', 'Migut.H01575' => 'egut', 'Migut.H02267' => 'egut', 'Migut.H02269' => 'egut', 'Migut.H02271' => 'egut', 'Migut.H02272' => 'egut', 'Migut.H02273' => 'egut', 'Migut.H02274' => 'egut', 'Migut.K00893' => 'egut', 'Migut.N02843' => 'egut', 'Migut.O00658' => 'egut', 'MSTRG.23389' => 'ama', 'MSTRG.24991' => 'ama', 'MSTRG.24992' => 'ama', 'MSTRG.2609' => 'ama', 'MSTRG.2610' => 'ama', 'MSTRG.3721' => 'ama', 'Nitab4.5_0000128g0030' => 'nta', 'Nitab4.5_0000354g0100' => 'nta', 'Nitab4.5_0000402g0250' => 'nta', 'Nitab4.5_0000402g0260' => 'nta', 'Nitab4.5_0000574g0050' => 'nta', 'Nitab4.5_0002364g0050' => 'nta', 'Nitab4.5_0003184g0010' => 'nta', 'Nitab4.5_0003184g0030' => 'nta', 'Nitab4.5_0003278g0040' => 'nta', 'Nitab4.5_0003278g0050' => 'nta', 'Nitab4.5_0005124g0050' => 'nta', 'Nitab4.5_0007086g0010' => 'nta', 'Nitab4.5_0007769g0020' => 'nta', 'Nitab4.5_0009158g0010' => 'nta', 'Nitab4.5_0010157g0020' => 'nta', 'Nitab4.5_0014857g0010' => 'nta', 'Nitab4.5_0014857g0030' => 'nta', 'Nitab4.5_0016574g0010' => 'nta', 'Nn1g05651' => 'nnu', 'Nn1g05652' => 'nnu', 'Nn1g06772' => 'nnu', 'Nn1g07170' => 'nnu', 'Nn4g22480' => 'nnu', 'Nn4g24970' => 'nnu', 'Nn5g29810' => 'nnu', 'Nn5g29811' => 'nnu', 'Oeu009266.1' => 'oeu', 'Oeu009267.2' => 'oeu', 'Oeu009268.1' => 'oeu', 'Oeu025017.1' => 'oeu', 'Oeu032658.1' => 'oeu', 'Oeu037497.1' => 'oeu', 'Oeu038165.1' => 'oeu', 'Oeu038168.1' => 'oeu', 'Oeu039627.1' => 'oeu', 'Oeu046536.1' => 'oeu', 'Oeu055144.4' => 'oeu', 'Oeu055145.1' => 'oeu', 'Oeu059628.1' => 'oeu', 'Oeu059629.2' => 'oeu', 'Oeu059631.1' => 'oeu', 'Os08g0554100' => 'osa', 'Os08g0554300' => 'osa', 'Os11g0134100' => 'osa', 'Os12g0131900' => 'osa', 'Peaxi162Scf00089g00010' => 'pax', 'Peaxi162Scf00160g00912' => 'pax', 'Peaxi162Scf00196g00325' => 'pax', 'Peaxi162Scf00220g00058' => 'pax', 'Peaxi162Scf00220g00612' => 'pax', 'Peaxi162Scf00821g00039' => 'pax', 'Peaxi162Scf00821g00110' => 'pax', 'Peaxi162Scf00821g00111' => 'pax', 'Peaxi162Scf00821g00210' => 'pax', 'Peaxi162Scf00821g00211' => 'pax', 'Peaxi162Scf00821g00312' => 'pax', 'Peaxi162Scf00821g00314' => 'pax', 'Peaxi162Scf00821g00315' => 'pax', 'Peaxi162Scf00939g00126' => 'pax', 'Peaxi162Scf00962g00311' => 'pax', 'PGR004G1415' => 'pgr', 'PGR031G1650' => 'pgr', 'PGR042G0276' => 'pgr', 'PGR042G0999' => 'pgr', 'PGR042G2068' => 'pgr', 'PGR042G3643' => 'pgr', 'PGR102G1266' => 'pgr', 'PGR102G2507' => 'pgr', 'PGR102G3319' => 'pgr', 'PGSC0003DMG400009330' => 'stu', 'PGSC0003DMG400014600' => 'stu', 'PGSC0003DMG400015675' => 'stu', 'PGSC0003DMG401002053' => 'stu', 'Phvul.002G144400' => 'pvu', 'Phvul.003G287200' => 'pvu', 'Phvul.003G287300' => 'pvu', 'Phvul.008G183500' => 'pvu', 'Phvul.009G144700' => 'pvu', 'Phvul.009G144850' => 'pvu', 'Phvul.L001614' => 'pvu', 'Potri.002G110000' => 'ptr', 'Potri.002G110100' => 'ptr', 'Potri.002G110200' => 'ptr', 'Potri.002G110300' => 'ptr', 'Potri.005G151500' => 'ptr', 'Potri.006G218500' => 'ptr', 'Potri.011G006200' => 'ptr', 'Potri.014G004500' => 'ptr', 'Pp3c4_23770' => 'ppa', 'Pp3c6_29380' => 'ppa', 'Prupe.1G536600' => 'ppe', 'Prupe.1G536700' => 'ppe', 'Prupe.1G537300' => 'ppe', 'Prupe.1G538300' => 'ppe', 'Prupe.1G538400' => 'ppe', 'Prupe.4G018900' => 'ppe', 'Prupe.6G208400' => 'ppe', 'Psat0s3268g0240' => 'psa', 'Psat0s471g0240' => 'psa', 'Psat2g064400' => 'psa', 'Psat2g091560' => 'psa', 'Psat2g091600' => 'psa', 'Psat4g117920' => 'psa', 'Psat5g018520' => 'psa', 'Psat5g018560' => 'psa', 'PSO063G1174' => 'pso', 'PSO063G1594' => 'pso', 'PSO063G4652' => 'pso', 'PSO063G5573' => 'pso', 'PSO079G0064' => 'pso', 'PSO423G0226' => 'pso', 'PSO478G3365' => 'pso', 'PSO509G0012' => 'pso', 'PSO541G5165' => 'pso', 'PSO541G5171' => 'pso', 'PSO541G5278' => 'pso', 'PSO675G0390' => 'pso', 'PSO675G2663' => 'pso', 'PSO675G7468' => 'pso', 'PSO675G7505' => 'pso', 'PSO700G0273' => 'pso', 'PSO761G0415' => 'pso', 'PSO832G1295' => 'pso', 'PSO832G2521' => 'pso', 'PSO832G3159' => 'pso', 'PSO832G3954' => 'pso', 'QL06p037103' => 'qlo', 'QL09p018676' => 'qlo', 'QL09p018683' => 'qlo', 'QL09p018697' => 'qlo', 'QL12p039668' => 'qlo', 'QL12p039684' => 'qlo', 'QL12p039694' => 'qlo', 'QL12p039744' => 'qlo', 'QL12p039767' => 'qlo', 'QL12p039776' => 'qlo', 'RcHm_v2.0_Chr2g0088421' => 'rch', 'RcHm_v2.0_Chr2g0088441' => 'rch', 'RcHm_v2.0_Chr2g0088461' => 'rch', 'RcHm_v2.0_Chr2g0088481' => 'rch', 'RcHm_v2.0_Chr2g0110401' => 'rch', 'RcHm_v2.0_Chr2g0110411' => 'rch', 'RcHm_v2.0_Chr2g0110431' => 'rch', 'RcHm_v2.0_Chr2g0150211' => 'rch', 'RcHm_v2.0_Chr2g0150221' => 'rch', 'RcHm_v2.0_Chr2g0150231' => 'rch', 'RcHm_v2.0_Chr5g0002721' => 'rch', 'RcHm_v2.0_Chr7g0182591' => 'rch', 'RcHm_v2.0_Chr7g0233611' => 'rch', 'RcHm_v2.0_Chr7g0233621' => 'rch', 'RcHm_v2.0_Chr7g0233701' => 'rch', 'RcHm_v2.0_Chr7g0233711' => 'rch', 'RcHm_v2.0_Chr7g0233721' => 'rch', 'RcHm_v2.0_Chr7g0233731' => 'rch', 'RcHm_v2.0_Chr7g0233741' => 'rch', 'Rhsim06G0069900' => 'rsi', 'Rhsim07G0213900' => 'rsi', 'Rhsim10G0175200' => 'rsi', 'Rhsim10G0175300' => 'rsi', 'Rhsim10G0175400' => 'rsi', 'Rhsim10G0175500' => 'rsi', 'Rhsim10G0175600' => 'rsi', 'Rhsim11G0179800' => 'rsi', 'Rhsim12G0002700' => 'rsi', 'RhsimUnG0098100' => 'rsi', 'Sabra02G0086500' => 'sbr', 'Sabra02G0086600' => 'sbr', 'Sabra02G0086700' => 'sbr', 'Sabra11G0005700' => 'sbr', 'Sabra13G0118100' => 'sbr', 'Sabra14G0001600' => 'sbr', 'Sabra14G0004200' => 'sbr', 'SalBow1G1950' => 'sbo', 'SalBow2G1623' => 'sbo', 'SalBow3G2650' => 'sbo', 'SalBow3G3041' => 'sbo', 'SalBow3G4322' => 'sbo', 'SalBow5G1277' => 'sbo', 'SalBow5G1821' => 'sbo', 'SalBow5G5649' => 'sbo', 'SalBow7G0059' => 'sbo', 'SalBow7G1911' => 'sbo', 'SalBow7G2642' => 'sbo', 'SalBow7G4288' => 'sbo', 'Sc03g0000530' => 'sci', 'Sc03g0000540' => 'sci', 'Sc15g0003060' => 'sci', 'Sc16g0000670' => 'sci', 'Sc16g0000680' => 'sci', 'Sc16g0001040' => 'sci', 'Sc26g0003010' => 'sci', 'Sc26g0003030' => 'sci', 'Sc26g0003040' => 'sci', 'Sed0000483' => 'sed', 'Sed0004180' => 'sed', 'Sed0005181' => 'sed', 'Sed0006117' => 'sed', 'Sed0006316' => 'sed', 'Sed0006943' => 'sed', 'Sed0010616' => 'sed', 'Sed0020952' => 'sed', 'Sed0024538' => 'sed', 'SEGI_03138' => 'sgi', 'SEGI_04157' => 'sgi', 'SEGI_05855' => 'sgi', 'SEGI_10052' => 'sgi', 'SEGI_11518' => 'sgi', 'SEGI_15826' => 'sgi', 'SEGI_26217' => 'sgi', 'SEGI_33753' => 'sgi', 'SEGI_41431' => 'sgi', 'SGA_v2.0_scaffold108G30945' => 'sas', 'SGA_v2.0_scaffold195G40878' => 'sas', 'SGA_v2.0_scaffold2G00930' => 'sas', 'SGA_v2.0_scaffold2G00932' => 'sas', 'SGA_v2.0_scaffold2G00934' => 'sas', 'SGA_v2.0_scaffold45G17192' => 'sas', 'SGA_v2.0_scaffold45G17204' => 'sas', 'SGA_v2.0_scaffold45G17209' => 'sas', 'SGA_v2.0_scaffold48G17886' => 'sas', 'SGA_v2.0_scaffold48G17887' => 'sas', 'SGA_v2.0_scaffold74G24547' => 'sas', 'SHI08616' => 'shi', 'SHI12197' => 'shi', 'SMO146G0060' => 'smo', 'SMO146G0101' => 'smo', 'SMO202G0036' => 'smo', 'SMO304G0005' => 'smo', 'SMO348G0063' => 'smo', 'Solyc04g014430.2' => 'sly', 'Solyc04g014450.1' => 'sly', 'Solyc04g076630.3' => 'sly', 'Solyc04g076640.3' => 'sly', 'Solyc04g076650.2' => 'sly', 'Solyc04g076660.3' => 'sly', 'Solyc05g051350.2' => 'sly', 'Solyc11g011270.1' => 'sly', 'Solyc11g011280.3' => 'sly', 'Solyc11g011290.3' => 'sly', 'Solyc11g011300.2' => 'sly', 'Solyc11g011310.3' => 'sly', 'Solyc11g011320.1' => 'sly', 'Solyc12g088050.2' => 'sly', 'Sopen04g006570' => 'spe', 'Sopen04g030360' => 'spe', 'Sopen04g030370' => 'spe', 'Sopen04g030380' => 'spe', 'Sopen05g029740' => 'spe', 'Sopen09g008730' => 'spe', 'Sopen11g006050' => 'spe', 'Sopen11g006060' => 'spe', 'Sopen11g006070' => 'spe', 'Sopen11g006080' => 'spe', 'Sopen12g030080' => 'spe', 'Sp1g08510' => 'spa', 'Sp1g08520' => 'spa', 'Sp1g08540' => 'spa', 'Sp4g01660' => 'spa', 'Sp7g22390' => 'spa', 'Sp7g35600' => 'spa', 'Sp7g35670' => 'spa', 'TAR381G0763' => 'tar', 'TAR624G0067' => 'tar', 'THA.LOC104807150' => 'tha', 'THA.LOC104816790' => 'tha', 'THA.LOC104816791' => 'tha', 'THA.LOC104824556' => 'tha', 'THA.LOC104824916' => 'tha', 'THA.LOC104824920' => 'tha', 'Thecc.01G086400' => 'tca', 'Thecc.08G074200' => 'tca', 'Thecc.08G074300' => 'tca', 'Thecc.08G074400' => 'tca', 'Thecc.08G074500' => 'tca', 'Thecc.08G074600' => 'tca', 'Thhalv10000697m.g' => 'esa', 'Thhalv10007038m.g' => 'esa', 'Thhalv10007058m.g' => 'esa', 'Thhalv10007093m.g' => 'esa', 'Thhalv10024612m.g' => 'esa', 'Thhalv10024647m.g' => 'esa', 'Thhalv10027081m.g' => 'esa', 'TPR.G12438' => 'tpr', 'TPR.G12453' => 'tpr', 'TPR.G12502' => 'tpr', 'TPR.G187' => 'tpr', 'TPR.G27027' => 'tpr', 'TPR.G27056' => 'tpr', 'TPR.G27179' => 'tpr', 'TPR.G27183' => 'tpr', 'TPR.G29822' => 'tpr', 'TPR.G32010' => 'tpr', 'TPR.G7682' => 'tpr', 'TWI36G0230' => 'twi', 'TWI36G1228' => 'twi', 'TWI38G0269' => 'twi', 'TWI53G1483' => 'twi', 'TWI56G0251' => 'twi', 'TWI56G0564' => 'twi', 'TWI56G0781' => 'twi', 'TWI56G1252' => 'twi', 'unitig_0.g1700' => 'ugi', 'unitig_0.g1701' => 'ugi', 'unitig_578.g16177' => 'ugi', 'unitig_736.g22594' => 'ugi', 'unitig_748.g8307' => 'ugi', 'unitig_749.g13865' => 'ugi', 'vmacro04627' => 'vma', 'vmacro07681' => 'vma', 'vmacro16059' => 'vma', 'vmacro21360' => 'vma', 'vmacro21361' => 'vma', 'VMungo0251G0077' => 'vmu', 'VMungo0251G1041' => 'vmu', 'VMungo0647G0033' => 'vmu', 'VMungo1215G0852' => 'vmu', 'VMungo1215G1241' => 'vmu', 'VMungo1215G2780' => 'vmu', 'VMungo1309G0534' => 'vmu', 'VMungo1309G3050' => 'vmu', 'VMungo1383G2870' => 'vmu', 'Zm00001eb039820' => 'zma', 'Zm00001eb170140' => 'zma', 'Zm00001eb196040' => 'zma', 'Zm00001eb235440' => 'zma', 'Zm00001eb332110' => 'zma' ) $gf_id = 'HOM05D000583' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000583' ) $data_identifier = 'HOM05D000583' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 11, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 20, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 13, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 12, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 14, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 7, 'fan' => (int) 28, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 1, 'sun' => (int) 12, 'lal' => (int) 16, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 23, 'mpo' => (int) 14, 'mbi' => (int) 5, 'mdo' => (int) 19, 'mtr' => (int) 9, 'cme' => (int) 8, 'egut' => (int) 11, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 15, 'osa' => (int) 4, 'pax' => (int) 15, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 21, 'qlo' => (int) 10, 'rch' => (int) 19, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 9, 'sas' => (int) 11, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 14, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 11, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb332110' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1